IL_5FCI_020
3D structure
- PDB id
- 5FCI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant uL3 W255C mutant 80S yeast ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5FCI|1|1|U|534, 5FCI|1|1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FCI_020 not in the Motif Atlas
- Homologous match to IL_8P9A_248
- Geometric discrepancy: 0.0946
- The information below is about IL_8P9A_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25001.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5FCI|1|1|G|531
5FCI|1|1|A|532
5FCI|1|1|A|533
5FCI|1|1|U|534
5FCI|1|1|G|535
5FCI|1|1|U|536
5FCI|1|1|A|537
5FCI|1|1|G|538
*
5FCI|1|1|U|553
5FCI|1|1|A|554
5FCI|1|1|U|555
5FCI|1|1|U|556
5FCI|1|1|A|557
5FCI|1|1|U|558
5FCI|1|1|A|559
5FCI|1|1|G|560
5FCI|1|1|C|561
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M4
- 60S ribosomal protein L14-A
- Chain N0
- 60S ribosomal protein L20-A
Coloring options: