3D structure

PDB id
5FCI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UCAAAGU*AACCAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5FCI_090 not in the Motif Atlas
Homologous match to IL_8P9A_316
Geometric discrepancy: 0.1033
The information below is about IL_8P9A_316
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65359.1
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
4

Unit IDs

5FCI|1|1|U|2211
5FCI|1|1|C|2212
5FCI|1|1|A|2213
5FCI|1|1|A|2214
5FCI|1|1|A|2215
5FCI|1|1|G|2216
5FCI|1|1|U|2217
*
5FCI|1|1|A|2228
5FCI|1|1|A|2229
5FCI|1|1|C|2230
5FCI|1|1|C|2231
5FCI|1|1|A|2232
5FCI|1|1|A|2233
5FCI|1|1|G|2234

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain O6
60S ribosomal protein L36-A
Chain Q2
60S ribosomal protein L42-A

Coloring options:


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