IL_5FCI_119

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

5FCI|1|1|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_119 not in the Motif Atlas

Homologous match to IL_8P9A_345

Geometric discrepancy: 0.0989

The information below is about IL_8P9A_345

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5FCI|1|1|U|3047
5FCI|1|1|A|3048
5FCI|1|1|A|3049
5FCI|1|1|U|3050
5FCI|1|1|U|3051
*
5FCI|1|1|A|3091
5FCI|1|1|C|3092
5FCI|1|1|C|3093
5FCI|1|1|A|3094

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain N3

60S ribosomal protein L23-A

Chain N4

60S ribosomal protein L24-A