IL_5FCI_151

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5FCI|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_151 not in the Motif Atlas

Homologous match to IL_8P9A_383

Geometric discrepancy: 0.1343

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

5FCI|1|2|G|143
5FCI|1|2|U|144
5FCI|1|2|A|145
5FCI|1|2|U|146
5FCI|1|2|A|147
5FCI|1|2|A|148
5FCI|1|2|C|149
*
5FCI|1|2|G|165
5FCI|1|2|C|166
5FCI|1|2|U|167
5FCI|1|2|A|168
5FCI|1|2|A|169
5FCI|1|2|U|170
5FCI|1|2|A|171
5FCI|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A