IL_5FCI_231

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_231 not in the Motif Atlas

Homologous match to IL_8P9A_463

Geometric discrepancy: 0.1522

The information below is about IL_8P9A_463

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5FCI|1|2|A|1678
5FCI|1|2|G|1679
5FCI|1|2|G|1680
5FCI|1|2|A|1681
5FCI|1|2|U|1682
*
5FCI|1|2|A|1719
5FCI|1|2|G|1720
5FCI|1|2|A|1721
5FCI|1|2|A|1722
5FCI|1|2|U|1723

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A