3D structure

PDB id
5FCI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
AUU*ACU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5FCI_292 not in the Motif Atlas
Homologous match to IL_8P9A_274
Geometric discrepancy: 0.0923
The information below is about IL_8P9A_274
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

5FCI|1|5|A|1120
5FCI|1|5|U|1121
5FCI|1|5|U|1122
*
5FCI|1|5|A|1136
5FCI|1|5|C|1137
5FCI|1|5|U|1138

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain l7
60S ribosomal protein L7-A
Chain n9
60S ribosomal protein L29

Coloring options:


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