IL_5FCI_341

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

5FCI|1|5|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_341 not in the Motif Atlas

Homologous match to IL_8P9A_323

Geometric discrepancy: 0.0652

The information below is about IL_8P9A_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

5FCI|1|5|U|2423
5FCI|1|5|A|2424
5FCI|1|5|G|2425
*
5FCI|1|5|U|2604
5FCI|1|5|G|2605
5FCI|1|5|G|2606
5FCI|1|5|G|2607

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain m5

60S ribosomal protein L15-A

Chain q2

60S ribosomal protein L42-A