IL_5FCI_384

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_384 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1629

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5FCI|1|5|A|3347
5FCI|1|5|G|3348
5FCI|1|5|C|3349
*
5FCI|1|5|G|3356
5FCI|1|5|U|3357
5FCI|1|5|U|3358

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n2

60S ribosomal protein L22-A

Chain s8

40S ribosomal protein S8-A