3D structure

PDB id
5FCI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GUAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
5FCI|1|6|U|170
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5FCI_396 not in the Motif Atlas
Homologous match to IL_8P9A_383
Geometric discrepancy: 0.0949
The information below is about IL_8P9A_383
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

5FCI|1|6|G|143
5FCI|1|6|U|144
5FCI|1|6|A|145
5FCI|1|6|U|146
5FCI|1|6|A|147
5FCI|1|6|A|148
5FCI|1|6|C|149
*
5FCI|1|6|G|165
5FCI|1|6|C|166
5FCI|1|6|U|167
5FCI|1|6|A|168
5FCI|1|6|A|169
5FCI|1|6|U|170
5FCI|1|6|A|171
5FCI|1|6|C|172

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain d4
40S ribosomal protein S24-A
Chain n4
60S ribosomal protein L24-A
Chain s6
40S ribosomal protein S6-A

Coloring options:


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