IL_5FCI_399

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

5FCI|1|6|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_399 not in the Motif Atlas

Homologous match to IL_8P9A_386

Geometric discrepancy: 0.1438

The information below is about IL_8P9A_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5FCI|1|6|G|204
5FCI|1|6|U|205
5FCI|1|6|A|206
*
5FCI|1|6|U|259
5FCI|1|6|U|260
5FCI|1|6|U|261
5FCI|1|6|U|262
5FCI|1|6|C|263

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A