IL_5FCI_423

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_423 not in the Motif Atlas

Homologous match to IL_8P9A_410

Geometric discrepancy: 0.1286

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5FCI|1|6|G|703
5FCI|1|6|C|704
5FCI|1|6|U|705
5FCI|1|6|A|706
5FCI|1|6|A|707
5FCI|1|6|C|708
*
5FCI|1|6|G|730
5FCI|1|6|C|731
5FCI|1|6|G|732
5FCI|1|6|A|733
5FCI|1|6|A|734
5FCI|1|6|C|735

Current chains

Chain 6

18S ribosomal RNA

Nearby chains