IL_5FCI_431

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

5FCI|1|6|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_431 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.109

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5FCI|1|6|G|868
5FCI|1|6|A|869
5FCI|1|6|C|870
*
5FCI|1|6|G|957
5FCI|1|6|U|958
5FCI|1|6|U|959
5FCI|1|6|U|960

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c3

40S ribosomal protein S13

Chain d7

40S ribosomal protein S27-A