IL_5FCI_502

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUGC*GCGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_502 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.2975

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5FCI|1|2|C|1173
5FCI|1|2|C|1174
5FCI|1|2|U|1175
5FCI|1|2|G|1176
5FCI|1|2|C|1177
*
5FCI|1|2|G|1462
5FCI|1|2|C|1463
5FCI|1|2|G|1464
5FCI|1|2|C|1465
5FCI|1|2|G|1466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A

Chain D0

40S ribosomal protein S20

Chain SM

Suppressor protein STM1,Suppressor protein STM1