IL_5FCI_518

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGGC*GAUUUCCA

Length

12 nucleotides

Bulged bases

5FCI|1|6|G|651, 5FCI|1|6|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_518 not in the Motif Atlas

Geometric match to IL_4V88_518

Geometric discrepancy: 0.181

The information below is about IL_4V88_518

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06083.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5FCI|1|6|U|650
5FCI|1|6|G|651
5FCI|1|6|G|652
5FCI|1|6|C|653
*
5FCI|1|6|G|677
5FCI|1|6|A|678
5FCI|1|6|U|679
5FCI|1|6|U|680
5FCI|1|6|U|681
5FCI|1|6|C|682
5FCI|1|6|C|683
5FCI|1|6|A|684

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s9

40S ribosomal protein S9-A