IL_5FCI_541

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAAGCA*UUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_541 not in the Motif Atlas

Homologous match to IL_8P9A_365

Geometric discrepancy: 0.0721

The information below is about IL_8P9A_365

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.1

Basepair signature

cWW-tSH-L-R-L-tHH-cWW

Number of instances in this motif group

5

Unit IDs

5FCI|1|7|G|21
5FCI|1|7|A|22
5FCI|1|7|A|23
5FCI|1|7|A|24
5FCI|1|7|G|25
5FCI|1|7|C|26
5FCI|1|7|A|27
*
5FCI|1|7|U|53
5FCI|1|7|U|54
5FCI|1|7|A|55
5FCI|1|7|A|56
5FCI|1|7|G|57
5FCI|1|7|C|58

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain m1

60S ribosomal protein L11-A