IL_5FCJ_021

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_021 not in the Motif Atlas

Geometric match to IL_4X4N_005

Geometric discrepancy: 0.1813

The information below is about IL_4X4N_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5FCJ|1|1|U|541
5FCJ|1|1|G|542
5FCJ|1|1|C|543
*
5FCJ|1|1|G|548
5FCJ|1|1|U|549
5FCJ|1|1|A|550

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N0

60S ribosomal protein L20-A