IL_5FCJ_062

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

5FCJ|1|1|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_062 not in the Motif Atlas

Homologous match to IL_8P9A_288

Geometric discrepancy: 0.1074

The information below is about IL_8P9A_288

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5FCJ|1|1|U|1398
5FCJ|1|1|A|1399
5FCJ|1|1|G|1400
*
5FCJ|1|1|C|1411
5FCJ|1|1|G|1412

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain L6

60S ribosomal protein L6-A

Chain O2

60S ribosomal protein L32