IL_5FCJ_149

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

5FCJ|1|2|C|114, 5FCJ|1|2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_149 not in the Motif Atlas

Homologous match to IL_8P9A_381

Geometric discrepancy: 0.1126

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5FCJ|1|2|U|113
5FCJ|1|2|C|114
5FCJ|1|2|G|115
5FCJ|1|2|U|116
*
5FCJ|1|2|A|300
5FCJ|1|2|A|301

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain S4

40S ribosomal protein S4-A

Chain S8

40S ribosomal protein S8-A