IL_5FCJ_151

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5FCJ|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_151 not in the Motif Atlas

Homologous match to IL_8P9A_383

Geometric discrepancy: 0.1132

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

5FCJ|1|2|G|143
5FCJ|1|2|U|144
5FCJ|1|2|A|145
5FCJ|1|2|U|146
5FCJ|1|2|A|147
5FCJ|1|2|A|148
5FCJ|1|2|C|149
*
5FCJ|1|2|G|165
5FCJ|1|2|C|166
5FCJ|1|2|U|167
5FCJ|1|2|A|168
5FCJ|1|2|A|169
5FCJ|1|2|U|170
5FCJ|1|2|A|171
5FCJ|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A