IL_5FCJ_276

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

5FCJ|1|5|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_276 not in the Motif Atlas

Homologous match to IL_8C3A_031

Geometric discrepancy: 0.133

The information below is about IL_8C3A_031

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5FCJ|1|5|A|828
5FCJ|1|5|U|829
*
5FCJ|1|5|A|895
5FCJ|1|5|A|896
5FCJ|1|5|U|897

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain o4

60S ribosomal protein L34-A