IL_5FCJ_385

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

5FCJ|1|5|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_385 not in the Motif Atlas

Homologous match to IL_8C3A_140

Geometric discrepancy: 0.277

The information below is about IL_8C3A_140

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5FCJ|1|5|G|3340
5FCJ|1|5|U|3341
5FCJ|1|5|A|3342
*
5FCJ|1|5|U|3363
5FCJ|1|5|C|3364

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A