IL_5FCJ_530

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

5FCJ|1|5|C|1016, 5FCJ|1|5|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_530 not in the Motif Atlas

Homologous match to IL_8CRE_477

Geometric discrepancy: 0.454

The information below is about IL_8CRE_477

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5FCJ|1|5|U|1014
5FCJ|1|5|U|1015
5FCJ|1|5|C|1016
5FCJ|1|5|C|1017
5FCJ|1|5|G|1018
*
5FCJ|1|5|U|1034
5FCJ|1|5|G|1035
5FCJ|1|5|A|1036

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain m1

60S ribosomal protein L11-A

Chain sM

Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1