IL_5FDU_007

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29698.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

21

Unit IDs

5FDU|1|1A|U|228
5FDU|1|1A|G|229
5FDU|1|1A|A|230
5FDU|1|1A|G|231
5FDU|1|1A|U|232
5FDU|1|1A|A|233
5FDU|1|1A|G|234
*
5FDU|1|1A|C|242
5FDU|1|1A|G|243
5FDU|1|1A|A|244
5FDU|1|1A|A|245
5FDU|1|1A|A|246
5FDU|1|1A|G|247

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15