IL_5FDU_014

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

5FDU|1|1A|U|529, 5FDU|1|1A|G|533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45805.1

Basepair signature

cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5FDU|1|1A|G|507
5FDU|1|1A|A|508
5FDU|1|1A|A|509
5FDU|1|1A|C|510
*
5FDU|1|1A|G|521
5FDU|1|1A|A|522
5FDU|1|1A|G|523
5FDU|1|1A|U|524
5FDU|1|1A|G|525
5FDU|1|1A|A|526
5FDU|1|1A|A|527
5FDU|1|1A|A|528
5FDU|1|1A|U|529
5FDU|1|1A|A|530
5FDU|1|1A|G|531
5FDU|1|1A|A|532
5FDU|1|1A|G|533
5FDU|1|1A|C|534

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24