IL_5FDU_018

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5FDU|1|1A|G|848, 5FDU|1|1A|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28684.1

Basepair signature

cWW-R-tHW-tHW-tWW-cWW

Number of instances in this motif group

12

Unit IDs

5FDU|1|1A|G|721
5FDU|1|1A|A|722
5FDU|1|1A|A|723
5FDU|1|1A|A|724
5FDU|1|1A|C|725
*
5FDU|1|1A|G|846
5FDU|1|1A|A|847
5FDU|1|1A|G|848
5FDU|1|1A|A|849
5FDU|1|1A|U|850
5FDU|1|1A|A|851
5FDU|1|1A|G|852
5FDU|1|1A|C|853

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15