IL_5FDU_021

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35765.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

58

Unit IDs

5FDU|1|1A|U|750
5FDU|1|1A|G|751
5FDU|1|1A|A|752
5FDU|1|1A|A|753
5FDU|1|1A|G|754
*
5FDU|1|1A|U|771
5FDU|1|1A|G|772
5FDU|1|1A|G|773
5FDU|1|1A|A|774
5FDU|1|1A|G|775

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2