IL_5FDU_023

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

5FDU|1|1A|G|823, 5FDU|1|1A|A|835, 5FDU|1|1A|A|836, 5FDU|1|1A|C|837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03097.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

5FDU|1|1A|G|822
5FDU|1|1A|G|823
5FDU|1|1A|A|824
*
5FDU|1|1A|U|834
5FDU|1|1A|A|835
5FDU|1|1A|A|836
5FDU|1|1A|C|837
5FDU|1|1A|C|838

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2

Chain 1F

50S ribosomal protein L4

Chain 1W

50S ribosomal protein L22