IL_5FDU_036

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5FDU|1|1A|A|1202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95526.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5FDU|1|1A|C|1044
5FDU|1|1A|U|1045
5FDU|1|1A|A|1046
5FDU|1|1A|A|1047
5FDU|1|1A|G|1048
*
5FDU|1|1A|C|1199
5FDU|1|1A|G|1200
5FDU|1|1A|A|1201
5FDU|1|1A|A|1202
5FDU|1|1A|G|1203

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21