IL_5FDU_037
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCCCCAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12582.1
- Basepair signature
- cWW-L-L-L-cSH-L-cWW
- Number of instances in this motif group
- 17
Unit IDs
5FDU|1|1A|C|1050
5FDU|1|1A|C|1051
5FDU|1|1A|C|1052
5FDU|1|1A|C|1053
5FDU|1|1A|C|1054
5FDU|1|1A|A|1055
5FDU|1|1A|A|1056
5FDU|1|1A|G|1057
*
5FDU|1|1A|C|1196
5FDU|1|1A|G|1197
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
Coloring options: