IL_5FDU_042

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5FDU|1|1A|A|1092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01890.1

Basepair signature

cWW-tSS-L-tSH-tSS-tHS-L-bif-cWW

Number of instances in this motif group

9

Unit IDs

5FDU|1|1A|C|1089
5FDU|1|1A|G|1090
5FDU|1|1A|A|1091
5FDU|1|1A|A|1092
5FDU|1|1A|G|1093
5FDU|1|1A|A|1094
5FDU|1|1A|C|1095
5FDU|1|1A|A|1096
5FDU|1|1A|G|1097
*
5FDU|1|1A|U|1154
5FDU|1|1A|C|1155
5FDU|1|1A|G|1156
5FDU|1|1A|A|1157
5FDU|1|1A|G|1158

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6