IL_5FDU_043

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_043 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.2345

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5FDU|1|1A|C|1099
5FDU|1|1A|A|1100
5FDU|1|1A|G|1101
*
5FDU|1|1A|C|1150
5FDU|1|1A|U|1151
5FDU|1|1A|G|1152

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains