IL_5FDU_049

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

5FDU|1|1A|A|1265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_049 not in the Motif Atlas

Homologous match to IL_7RQB_048

Geometric discrepancy: 0.0616

The information below is about IL_7RQB_048

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5FDU|1|1A|G|1264
5FDU|1|1A|A|1265
5FDU|1|1A|C|1266
*
5FDU|1|1A|G|1275
5FDU|1|1A|C|1276

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21