IL_5FDU_054

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68393.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

26

Unit IDs

5FDU|1|1A|U|1403
5FDU|1|1A|G|1404
5FDU|1|1A|A|1405
5FDU|1|1A|A|1406
5FDU|1|1A|G|1407
*
5FDU|1|1A|C|1416
5FDU|1|1A|G|1417
5FDU|1|1A|U|1418
5FDU|1|1A|A|1419
5FDU|1|1A|G|1420

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2