IL_5FDU_056

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

5FDU|1|1A|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95526.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5FDU|1|1A|C|1463
5FDU|1|1A|G|1464
5FDU|1|1A|A|1465
5FDU|1|1A|U|1466
5FDU|1|1A|G|1467
*
5FDU|1|1A|C|1624
5FDU|1|1A|U|1625
5FDU|1|1A|A|1626
5FDU|1|1A|A|1627
5FDU|1|1A|G|1628

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains