IL_5FDU_068

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

5FDU|1|1A|G|2014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09763.1

Basepair signature

cWW-cWH-cWW

Number of instances in this motif group

62

Unit IDs

5FDU|1|1A|A|1716
5FDU|1|1A|C|1717
5FDU|1|1A|U|1718
5FDU|1|1A|C|1719
5FDU|1|1A|U|1720
5FDU|1|1A|G|1721
*
5FDU|1|1A|C|2012
5FDU|1|1A|U|2013
5FDU|1|1A|G|2014
5FDU|1|1A|U|2015

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14