IL_5FDU_071
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCGAAC*GGAGGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 5FDU|1|1A|G|1832, 5FDU|1|1A|G|1847, 5FDU|1|1A|U|1851
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76485.1
- Basepair signature
- cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5FDU|1|1A|U|1829
5FDU|1|1A|G|1830
5FDU|1|1A|C|1831
5FDU|1|1A|G|1832
5FDU|1|1A|A|1833
5FDU|1|1A|A|1834
5FDU|1|1A|C|1835
*
5FDU|1|1A|G|1844
5FDU|1|1A|G|1845
5FDU|1|1A|A|1846
5FDU|1|1A|G|1847
5FDU|1|1A|G|1848
5FDU|1|1A|U|1849
5FDU|1|1A|A|1850
5FDU|1|1A|U|1851
5FDU|1|1A|A|1852
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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