IL_5FDU_080

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

5FDU|1|1A|C|2077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86992.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5FDU|1|1A|A|2076
5FDU|1|1A|C|2077
5FDU|1|1A|G|2078
5FDU|1|1A|A|2079
*
5FDU|1|1A|U|2623
5FDU|1|1A|C|2624
5FDU|1|1A|U|2625
5FDU|1|1A|A|2626
5FDU|1|1A|U|2627

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1W

50S ribosomal protein L22

Chain 1y

Metalnikowin I