IL_5FDU_086

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_086 not in the Motif Atlas

Homologous match to IL_7RQB_085

Geometric discrepancy: 0.2477

The information below is about IL_7RQB_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|1A|G|2132
5FDU|1|1A|C|2133
5FDU|1|1A|G|2134
5FDU|1|1A|U|2135
5FDU|1|1A|A|2136
5FDU|1|1A|G|2137
5FDU|1|1A|G|2138
5FDU|1|1A|A|2139
5FDU|1|1A|U|2140
5FDU|1|1A|A|2141
5FDU|1|1A|G|2142
*
5FDU|1|1A|C|2200
5FDU|1|1A|C|2201

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains