IL_5FDU_088

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUGUGAAC*GGGAGG

Length

15 nucleotides

Bulged bases

5FDU|1|1A|U|2154

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|1A|C|2150
5FDU|1|1A|C|2151
5FDU|1|1A|U|2152
5FDU|1|1A|G|2153
5FDU|1|1A|U|2154
5FDU|1|1A|G|2155
5FDU|1|1A|A|2156
5FDU|1|1A|A|2157
5FDU|1|1A|C|2158
*
5FDU|1|1A|G|2177
5FDU|1|1A|G|2178
5FDU|1|1A|G|2179
5FDU|1|1A|A|2180
5FDU|1|1A|G|2181
5FDU|1|1A|G|2182

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains