IL_5FDU_103

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5FDU|1|1A|G|2793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30312.1

Basepair signature

cWW-R-cSH-tWH-tSH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5FDU|1|1A|U|2648
5FDU|1|1A|U|2649
5FDU|1|1A|G|2650
5FDU|1|1A|A|2651
5FDU|1|1A|G|2652
*
5FDU|1|1A|C|2787
5FDU|1|1A|A|2788
5FDU|1|1A|A|2789
5FDU|1|1A|G|2790
5FDU|1|1A|A|2791
5FDU|1|1A|U|2792
5FDU|1|1A|G|2793
5FDU|1|1A|A|2794
5FDU|1|1A|G|2795

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13