IL_5FDU_170

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_170 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.0949

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|1a|G|1401
5FDU|1|1a|4OC|1402
5FDU|1|1a|C|1403
5FDU|1|1a|5MC|1404
5FDU|1|1a|G|1405
*
5FDU|1|1a|C|1496
5FDU|1|1a|G|1497
5FDU|1|1a|UR3|1498
5FDU|1|1a|A|1499
5FDU|1|1a|A|1500
5FDU|1|1a|C|1501

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1l

30S ribosomal protein S12

Chain 1x

Ribosome-associated inhibitor A