IL_5FDU_182
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDU_182 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.0364
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5FDU|1|2A|G|188
5FDU|1|2A|G|189
5FDU|1|2A|A|190
5FDU|1|2A|A|191
5FDU|1|2A|C|192
5FDU|1|2A|U|193
5FDU|1|2A|G|194
*
5FDU|1|2A|C|201
5FDU|1|2A|U|202
5FDU|1|2A|C|203
5FDU|1|2A|A|204
5FDU|1|2A|G|205
5FDU|1|2A|U|206
5FDU|1|2A|A|207
5FDU|1|2A|C|208
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L28
- Chain 27
- 50S ribosomal protein L34
- Chain 28
- 50S ribosomal protein L35
- Chain 2P
- 50S ribosomal protein L15
Coloring options: