IL_5FDU_200

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

5FDU|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_200 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.079

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5FDU|1|2A|C|844
5FDU|1|2A|G|845
5FDU|1|2A|C|846
*
5FDU|1|2A|G|931
5FDU|1|2A|G|932
5FDU|1|2A|A|933
5FDU|1|2A|G|934

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30