IL_5FDU_229

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

5FDU|1|2A|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_229 not in the Motif Atlas

Homologous match to IL_7RQB_056

Geometric discrepancy: 0.0664

The information below is about IL_7RQB_056

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.7

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

5FDU|1|2A|U|1433
5FDU|1|2A|A|1434
5FDU|1|2A|G|1435
*
5FDU|1|2A|C|1557
5FDU|1|2A|A|1558
5FDU|1|2A|G|1559
5FDU|1|2A|G|1560

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains