IL_5FDU_233

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_233 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0982

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5FDU|1|2A|A|1469
5FDU|1|2A|G|1470
5FDU|1|2A|A|1471
5FDU|1|2A|A|1472
5FDU|1|2A|G|1473
*
5FDU|1|2A|U|1518
5FDU|1|2A|G|1519
5FDU|1|2A|G|1520
5FDU|1|2A|U|1523

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains