IL_5FDU_233
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDU_233 not in the Motif Atlas
- Homologous match to IL_7RQB_060
- Geometric discrepancy: 0.0982
- The information below is about IL_7RQB_060
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_07235.1
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5FDU|1|2A|A|1469
5FDU|1|2A|G|1470
5FDU|1|2A|A|1471
5FDU|1|2A|A|1472
5FDU|1|2A|G|1473
*
5FDU|1|2A|U|1518
5FDU|1|2A|G|1519
5FDU|1|2A|G|1520
5FDU|1|2A|U|1523
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: