3D structure

PDB id
5FDU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AGAAG*UGGU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5FDU_233 not in the Motif Atlas
Homologous match to IL_7RQB_060
Geometric discrepancy: 0.0982
The information below is about IL_7RQB_060
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_07235.1
Basepair signature
cWW-tSH-L-tHS-cWW
Number of instances in this motif group
8

Unit IDs

5FDU|1|2A|A|1469
5FDU|1|2A|G|1470
5FDU|1|2A|A|1471
5FDU|1|2A|A|1472
5FDU|1|2A|G|1473
*
5FDU|1|2A|U|1518
5FDU|1|2A|G|1519
5FDU|1|2A|G|1520
5FDU|1|2A|U|1523

Current chains

Chain 2A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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