IL_5FDU_241

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5FDU|1|2A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_241 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0542

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5FDU|1|2A|C|1686
5FDU|1|2A|G|1687
5FDU|1|2A|U|1688
5FDU|1|2A|A|1689
5FDU|1|2A|A|1690
5FDU|1|2A|C|1691
*
5FDU|1|2A|G|1696
5FDU|1|2A|G|1697
5FDU|1|2A|A|1698
5FDU|1|2A|G|1699
5FDU|1|2A|A|1700
5FDU|1|2A|A|1701
5FDU|1|2A|G|1702

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA