IL_5FDU_308

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_308 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.114

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5FDU|1|2a|G|409
5FDU|1|2a|G|410
5FDU|1|2a|A|411
5FDU|1|2a|A|412
5FDU|1|2a|G|413
5FDU|1|2a|A|414
5FDU|1|2a|A|415
5FDU|1|2a|G|416
*
5FDU|1|2a|U|427
5FDU|1|2a|G|428
5FDU|1|2a|U|429
5FDU|1|2a|A|430
5FDU|1|2a|A|431
5FDU|1|2a|A|432
5FDU|1|2a|C|433

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4