IL_5FDU_365

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_365 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0508

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5FDU|1|2A|G|1666
5FDU|1|2A|G|1667
5FDU|1|2A|A|1668
5FDU|1|2A|A|1669
5FDU|1|2A|C|1670
5FDU|1|2A|U|1671
5FDU|1|2A|C|1672
5FDU|1|2A|U|1673
5FDU|1|2A|G|1674
*
5FDU|1|2A|C|1990
5FDU|1|2A|U|1991
5FDU|1|2A|G|1992
5FDU|1|2A|U|1993
5FDU|1|2A|C|1994

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14