IL_5FDV_004
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 5FDV|1|1A|G|99
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDV_004 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.0421
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
5FDV|1|1A|G|80
5FDV|1|1A|G|81
5FDV|1|1A|G|82
5FDV|1|1A|A|83
5FDV|1|1A|G|84
*
5FDV|1|1A|C|96
5FDV|1|1A|G|97
5FDV|1|1A|U|98
5FDV|1|1A|G|99
5FDV|1|1A|G|100
5FDV|1|1A|A|101
5FDV|1|1A|U|102
5FDV|1|1A|C|103
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 12
- 50S ribosomal protein L29
- Chain 1Y
- 50S ribosomal protein L24
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