IL_5FDV_026

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_026 not in the Motif Atlas

Homologous match to IL_7RQB_026

Geometric discrepancy: 0.0416

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5FDV|1|1A|C|893
5FDV|1|1A|U|894
5FDV|1|1A|G|895
5FDV|1|1A|A|896
5FDV|1|1A|C|897
*
5FDV|1|1A|G|973
5FDV|1|1A|G|974
5FDV|1|1A|U|975
5FDV|1|1A|G|976

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30